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Graph-based approaches to protein structure comparison

Name: Graph-based approaches to protein structure comparison
Brand: Sudwestdeutscher Verlag Fur Hochschulschriften AG
SKU: 07008919
Price: 80.01 EUR
Availability: InStock
Author: Marco Mernberger
ISBN: 9783838134529

Marco Mernberger

Jazyk

Nemčina

Kniha Brožovaná

Libristo kód: 07008919

Nakladateľstvo Sudwestdeutscher Verlag Fur Hochschulschriften AG, august 2012

The comparison of protein structures is a central task in structural bioinformatics. Drawing upon st... Celý popis

Libristo kód: 07008919

194 b

80.01 €

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The comparison of protein structures is a central task in structural bioinformatics. Drawing upon structural information enables the inference of function for unknown proteins, even without apparent homology on the sequence level. Regarding enzyme function, the conformation of the catalytic site or the binding pocket accomodating bound substrates or ligands is especially interesting due to structural constraints imposed by the catalyzed reaction or the bound molecule. Hence, these sites are likely to be similar in proteins interacting with similar molecules. This is especially appealing in pharmaceutics as it allows for the prediction of cross reactivities prior to expensive clinical trials. In this book, Marco Mernberger gives an introduction to protein structure comparison with a special regard to protein binding pockets and developes different graph-based approaches based on global, local and semi-global strategies. As it is not apparent which principle is more suitable for the detection of cross reactivities, a comparative study is conducted, highlighting the advantages and drawbacks of local, global and semi-global methods.